Well ID and other comments in stress period data in flopy











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1
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I would like to assign a commented out Well ID number to my well file, (also do the same for ghb cells) but I cannot find anything on how to do so.



I wrote something to create my own ghb file but if I try to load it back into my flopy mf class, and later write it out my other packages with mf.write_input() the comments do not stay and it gets overwritten.



I know in mf.wrtie_input() I can specify what packages to write out, and if I take away the ghb file I made earlier (or well file) then the original file does not get written over which is good.



But I would like to know if there is a way to straight up add comments to the stress_period_data for each package so I can keep it all contained in the flopy class.



Thanks










share|improve this question


























    up vote
    1
    down vote

    favorite












    I would like to assign a commented out Well ID number to my well file, (also do the same for ghb cells) but I cannot find anything on how to do so.



    I wrote something to create my own ghb file but if I try to load it back into my flopy mf class, and later write it out my other packages with mf.write_input() the comments do not stay and it gets overwritten.



    I know in mf.wrtie_input() I can specify what packages to write out, and if I take away the ghb file I made earlier (or well file) then the original file does not get written over which is good.



    But I would like to know if there is a way to straight up add comments to the stress_period_data for each package so I can keep it all contained in the flopy class.



    Thanks










    share|improve this question
























      up vote
      1
      down vote

      favorite









      up vote
      1
      down vote

      favorite











      I would like to assign a commented out Well ID number to my well file, (also do the same for ghb cells) but I cannot find anything on how to do so.



      I wrote something to create my own ghb file but if I try to load it back into my flopy mf class, and later write it out my other packages with mf.write_input() the comments do not stay and it gets overwritten.



      I know in mf.wrtie_input() I can specify what packages to write out, and if I take away the ghb file I made earlier (or well file) then the original file does not get written over which is good.



      But I would like to know if there is a way to straight up add comments to the stress_period_data for each package so I can keep it all contained in the flopy class.



      Thanks










      share|improve this question













      I would like to assign a commented out Well ID number to my well file, (also do the same for ghb cells) but I cannot find anything on how to do so.



      I wrote something to create my own ghb file but if I try to load it back into my flopy mf class, and later write it out my other packages with mf.write_input() the comments do not stay and it gets overwritten.



      I know in mf.wrtie_input() I can specify what packages to write out, and if I take away the ghb file I made earlier (or well file) then the original file does not get written over which is good.



      But I would like to know if there is a way to straight up add comments to the stress_period_data for each package so I can keep it all contained in the flopy class.



      Thanks







      python flopy






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      share|improve this question











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      share|improve this question










      asked Nov 11 at 14:56









      rosskush

      91




      91
























          2 Answers
          2






          active

          oldest

          votes

















          up vote
          2
          down vote













          Like in this example, you can extend the default dtype to include extra attributes that the MfList instance will carry to the write:



          well_dtype = [('k', '<i8'), ('i', '<i8'), ('j', '<i8'),('flux', '<f4'), ('wel_id', object)]
          stress_period_data = np.zeros((3), dtype=well_dtype)
          wel = flopy.modflow.ModflowWel(m, stress_period_data=stress_period_data, dtype=well_dtype)


          I'm not sure of an easy way to load an existing wel package with extra attributes - just FYI






          share|improve this answer





















          • Awesome, thanks, changing the dtype makes perfect sense.
            – rosskush
            Nov 11 at 18:23










          • So for stress period data I typically use dictionaries and not arrays, for example: spd = {0:[l,r,c,flux],1:[l,r,c,flux]}... etc, how would I go about making it to where I can use a dictionary that looks like {0:[l,r,c,flux,well_ID],1:[l,r,c,flux,well_ID]}? or if it's easier, convert my dictionaries to arrays, I know I could force my dictionary to an array but would be curious to know if it is possible to stick with only dictionaries
            – rosskush
            Nov 26 at 19:17




















          up vote
          0
          down vote













          The only way I know to carry remarks over from an existing package is to open the file in read mode, create a pandas DataFrame with the column data, and build a new package out of it. Here is an example:



          import os
          import pandas as pd
          import flopy.modflow as fpm
          from collections import OrderedDict


          pak_nam = 'drn'
          mf_version = 'mfnwt'

          # the model from which the DRN package will be copied
          inmod = fpm.Modflow.load('10kTDS.nam',
          model_ws=r'..10kTDS',
          version=mf_version,
          load_only=['drn'],
          check=False)

          # the model where the new DRN package will be attached
          mf = fpm.Modflow.load('ss2010.nam',
          model_ws=os.path.join('..', 'ss2010'),
          version=mf_version,
          load_only=['dis', 'bas6'],
          check=False)

          # read the contents of the DRN package
          with open(inmod.drn.fn_path, 'r') as f:
          lines = f.readlines()

          # create pandas DataFrame
          data =
          for line in lines[3:]:
          pieces = line.strip().split('#')
          t = pieces[0].strip().split()
          remark = pieces[-1]
          if t[0] == '-1':
          break
          else:
          data.append([int(t[0]),
          int(t[1]),
          int(t[2]),
          float(t[3]),
          float(t[4]),
          '# ' + remark.strip()])
          pak_df = pd.DataFrame(data,
          columns=['k', 'i', 'j', 'alt_va', 'cond', 'remark'])
          pak_df.loc[:, ['k', 'i', 'j']] -= 1

          # specify data format
          formats = OrderedDict([('k', '{:>10d}'.format),
          ('i', '{:>10d}'.format),
          ('j', '{:>10d}'.format),
          ('alt_va', '{:>.2F}'.format),
          ('cond', '{:>15.6E}'.format),
          ('remark', '{>:50}'.format)])

          # create new stress period data: for numpy record array use DataFrame.to_records()
          pak_spd = {0: pak_df[list(formats.keys())].to_records(index=False)}

          # attach DRN package to new model
          pak = fpm.ModflowDrn(mf,
          stress_period_data=pak_spd,
          ipakcb=53,
          options=['NOPRINT'],
          filenames=os.path.join('..', 'ss2010', 'ss2010.{}'.format(pak_nam)),
          dtype=pak_spd[0].dtype)

          pak.write_file(check=False)





          share|improve this answer



















          • 1




            Hey Jason, I was able to read in my files in a similar way to yours too, but it would be cool to see something within flopy.
            – rosskush
            Nov 14 at 16:58











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          2 Answers
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          active

          oldest

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          2 Answers
          2






          active

          oldest

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          active

          oldest

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          active

          oldest

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          up vote
          2
          down vote













          Like in this example, you can extend the default dtype to include extra attributes that the MfList instance will carry to the write:



          well_dtype = [('k', '<i8'), ('i', '<i8'), ('j', '<i8'),('flux', '<f4'), ('wel_id', object)]
          stress_period_data = np.zeros((3), dtype=well_dtype)
          wel = flopy.modflow.ModflowWel(m, stress_period_data=stress_period_data, dtype=well_dtype)


          I'm not sure of an easy way to load an existing wel package with extra attributes - just FYI






          share|improve this answer





















          • Awesome, thanks, changing the dtype makes perfect sense.
            – rosskush
            Nov 11 at 18:23










          • So for stress period data I typically use dictionaries and not arrays, for example: spd = {0:[l,r,c,flux],1:[l,r,c,flux]}... etc, how would I go about making it to where I can use a dictionary that looks like {0:[l,r,c,flux,well_ID],1:[l,r,c,flux,well_ID]}? or if it's easier, convert my dictionaries to arrays, I know I could force my dictionary to an array but would be curious to know if it is possible to stick with only dictionaries
            – rosskush
            Nov 26 at 19:17

















          up vote
          2
          down vote













          Like in this example, you can extend the default dtype to include extra attributes that the MfList instance will carry to the write:



          well_dtype = [('k', '<i8'), ('i', '<i8'), ('j', '<i8'),('flux', '<f4'), ('wel_id', object)]
          stress_period_data = np.zeros((3), dtype=well_dtype)
          wel = flopy.modflow.ModflowWel(m, stress_period_data=stress_period_data, dtype=well_dtype)


          I'm not sure of an easy way to load an existing wel package with extra attributes - just FYI






          share|improve this answer





















          • Awesome, thanks, changing the dtype makes perfect sense.
            – rosskush
            Nov 11 at 18:23










          • So for stress period data I typically use dictionaries and not arrays, for example: spd = {0:[l,r,c,flux],1:[l,r,c,flux]}... etc, how would I go about making it to where I can use a dictionary that looks like {0:[l,r,c,flux,well_ID],1:[l,r,c,flux,well_ID]}? or if it's easier, convert my dictionaries to arrays, I know I could force my dictionary to an array but would be curious to know if it is possible to stick with only dictionaries
            – rosskush
            Nov 26 at 19:17















          up vote
          2
          down vote










          up vote
          2
          down vote









          Like in this example, you can extend the default dtype to include extra attributes that the MfList instance will carry to the write:



          well_dtype = [('k', '<i8'), ('i', '<i8'), ('j', '<i8'),('flux', '<f4'), ('wel_id', object)]
          stress_period_data = np.zeros((3), dtype=well_dtype)
          wel = flopy.modflow.ModflowWel(m, stress_period_data=stress_period_data, dtype=well_dtype)


          I'm not sure of an easy way to load an existing wel package with extra attributes - just FYI






          share|improve this answer












          Like in this example, you can extend the default dtype to include extra attributes that the MfList instance will carry to the write:



          well_dtype = [('k', '<i8'), ('i', '<i8'), ('j', '<i8'),('flux', '<f4'), ('wel_id', object)]
          stress_period_data = np.zeros((3), dtype=well_dtype)
          wel = flopy.modflow.ModflowWel(m, stress_period_data=stress_period_data, dtype=well_dtype)


          I'm not sure of an easy way to load an existing wel package with extra attributes - just FYI







          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered Nov 11 at 17:51









          JDub

          212




          212












          • Awesome, thanks, changing the dtype makes perfect sense.
            – rosskush
            Nov 11 at 18:23










          • So for stress period data I typically use dictionaries and not arrays, for example: spd = {0:[l,r,c,flux],1:[l,r,c,flux]}... etc, how would I go about making it to where I can use a dictionary that looks like {0:[l,r,c,flux,well_ID],1:[l,r,c,flux,well_ID]}? or if it's easier, convert my dictionaries to arrays, I know I could force my dictionary to an array but would be curious to know if it is possible to stick with only dictionaries
            – rosskush
            Nov 26 at 19:17




















          • Awesome, thanks, changing the dtype makes perfect sense.
            – rosskush
            Nov 11 at 18:23










          • So for stress period data I typically use dictionaries and not arrays, for example: spd = {0:[l,r,c,flux],1:[l,r,c,flux]}... etc, how would I go about making it to where I can use a dictionary that looks like {0:[l,r,c,flux,well_ID],1:[l,r,c,flux,well_ID]}? or if it's easier, convert my dictionaries to arrays, I know I could force my dictionary to an array but would be curious to know if it is possible to stick with only dictionaries
            – rosskush
            Nov 26 at 19:17


















          Awesome, thanks, changing the dtype makes perfect sense.
          – rosskush
          Nov 11 at 18:23




          Awesome, thanks, changing the dtype makes perfect sense.
          – rosskush
          Nov 11 at 18:23












          So for stress period data I typically use dictionaries and not arrays, for example: spd = {0:[l,r,c,flux],1:[l,r,c,flux]}... etc, how would I go about making it to where I can use a dictionary that looks like {0:[l,r,c,flux,well_ID],1:[l,r,c,flux,well_ID]}? or if it's easier, convert my dictionaries to arrays, I know I could force my dictionary to an array but would be curious to know if it is possible to stick with only dictionaries
          – rosskush
          Nov 26 at 19:17






          So for stress period data I typically use dictionaries and not arrays, for example: spd = {0:[l,r,c,flux],1:[l,r,c,flux]}... etc, how would I go about making it to where I can use a dictionary that looks like {0:[l,r,c,flux,well_ID],1:[l,r,c,flux,well_ID]}? or if it's easier, convert my dictionaries to arrays, I know I could force my dictionary to an array but would be curious to know if it is possible to stick with only dictionaries
          – rosskush
          Nov 26 at 19:17














          up vote
          0
          down vote













          The only way I know to carry remarks over from an existing package is to open the file in read mode, create a pandas DataFrame with the column data, and build a new package out of it. Here is an example:



          import os
          import pandas as pd
          import flopy.modflow as fpm
          from collections import OrderedDict


          pak_nam = 'drn'
          mf_version = 'mfnwt'

          # the model from which the DRN package will be copied
          inmod = fpm.Modflow.load('10kTDS.nam',
          model_ws=r'..10kTDS',
          version=mf_version,
          load_only=['drn'],
          check=False)

          # the model where the new DRN package will be attached
          mf = fpm.Modflow.load('ss2010.nam',
          model_ws=os.path.join('..', 'ss2010'),
          version=mf_version,
          load_only=['dis', 'bas6'],
          check=False)

          # read the contents of the DRN package
          with open(inmod.drn.fn_path, 'r') as f:
          lines = f.readlines()

          # create pandas DataFrame
          data =
          for line in lines[3:]:
          pieces = line.strip().split('#')
          t = pieces[0].strip().split()
          remark = pieces[-1]
          if t[0] == '-1':
          break
          else:
          data.append([int(t[0]),
          int(t[1]),
          int(t[2]),
          float(t[3]),
          float(t[4]),
          '# ' + remark.strip()])
          pak_df = pd.DataFrame(data,
          columns=['k', 'i', 'j', 'alt_va', 'cond', 'remark'])
          pak_df.loc[:, ['k', 'i', 'j']] -= 1

          # specify data format
          formats = OrderedDict([('k', '{:>10d}'.format),
          ('i', '{:>10d}'.format),
          ('j', '{:>10d}'.format),
          ('alt_va', '{:>.2F}'.format),
          ('cond', '{:>15.6E}'.format),
          ('remark', '{>:50}'.format)])

          # create new stress period data: for numpy record array use DataFrame.to_records()
          pak_spd = {0: pak_df[list(formats.keys())].to_records(index=False)}

          # attach DRN package to new model
          pak = fpm.ModflowDrn(mf,
          stress_period_data=pak_spd,
          ipakcb=53,
          options=['NOPRINT'],
          filenames=os.path.join('..', 'ss2010', 'ss2010.{}'.format(pak_nam)),
          dtype=pak_spd[0].dtype)

          pak.write_file(check=False)





          share|improve this answer



















          • 1




            Hey Jason, I was able to read in my files in a similar way to yours too, but it would be cool to see something within flopy.
            – rosskush
            Nov 14 at 16:58















          up vote
          0
          down vote













          The only way I know to carry remarks over from an existing package is to open the file in read mode, create a pandas DataFrame with the column data, and build a new package out of it. Here is an example:



          import os
          import pandas as pd
          import flopy.modflow as fpm
          from collections import OrderedDict


          pak_nam = 'drn'
          mf_version = 'mfnwt'

          # the model from which the DRN package will be copied
          inmod = fpm.Modflow.load('10kTDS.nam',
          model_ws=r'..10kTDS',
          version=mf_version,
          load_only=['drn'],
          check=False)

          # the model where the new DRN package will be attached
          mf = fpm.Modflow.load('ss2010.nam',
          model_ws=os.path.join('..', 'ss2010'),
          version=mf_version,
          load_only=['dis', 'bas6'],
          check=False)

          # read the contents of the DRN package
          with open(inmod.drn.fn_path, 'r') as f:
          lines = f.readlines()

          # create pandas DataFrame
          data =
          for line in lines[3:]:
          pieces = line.strip().split('#')
          t = pieces[0].strip().split()
          remark = pieces[-1]
          if t[0] == '-1':
          break
          else:
          data.append([int(t[0]),
          int(t[1]),
          int(t[2]),
          float(t[3]),
          float(t[4]),
          '# ' + remark.strip()])
          pak_df = pd.DataFrame(data,
          columns=['k', 'i', 'j', 'alt_va', 'cond', 'remark'])
          pak_df.loc[:, ['k', 'i', 'j']] -= 1

          # specify data format
          formats = OrderedDict([('k', '{:>10d}'.format),
          ('i', '{:>10d}'.format),
          ('j', '{:>10d}'.format),
          ('alt_va', '{:>.2F}'.format),
          ('cond', '{:>15.6E}'.format),
          ('remark', '{>:50}'.format)])

          # create new stress period data: for numpy record array use DataFrame.to_records()
          pak_spd = {0: pak_df[list(formats.keys())].to_records(index=False)}

          # attach DRN package to new model
          pak = fpm.ModflowDrn(mf,
          stress_period_data=pak_spd,
          ipakcb=53,
          options=['NOPRINT'],
          filenames=os.path.join('..', 'ss2010', 'ss2010.{}'.format(pak_nam)),
          dtype=pak_spd[0].dtype)

          pak.write_file(check=False)





          share|improve this answer



















          • 1




            Hey Jason, I was able to read in my files in a similar way to yours too, but it would be cool to see something within flopy.
            – rosskush
            Nov 14 at 16:58













          up vote
          0
          down vote










          up vote
          0
          down vote









          The only way I know to carry remarks over from an existing package is to open the file in read mode, create a pandas DataFrame with the column data, and build a new package out of it. Here is an example:



          import os
          import pandas as pd
          import flopy.modflow as fpm
          from collections import OrderedDict


          pak_nam = 'drn'
          mf_version = 'mfnwt'

          # the model from which the DRN package will be copied
          inmod = fpm.Modflow.load('10kTDS.nam',
          model_ws=r'..10kTDS',
          version=mf_version,
          load_only=['drn'],
          check=False)

          # the model where the new DRN package will be attached
          mf = fpm.Modflow.load('ss2010.nam',
          model_ws=os.path.join('..', 'ss2010'),
          version=mf_version,
          load_only=['dis', 'bas6'],
          check=False)

          # read the contents of the DRN package
          with open(inmod.drn.fn_path, 'r') as f:
          lines = f.readlines()

          # create pandas DataFrame
          data =
          for line in lines[3:]:
          pieces = line.strip().split('#')
          t = pieces[0].strip().split()
          remark = pieces[-1]
          if t[0] == '-1':
          break
          else:
          data.append([int(t[0]),
          int(t[1]),
          int(t[2]),
          float(t[3]),
          float(t[4]),
          '# ' + remark.strip()])
          pak_df = pd.DataFrame(data,
          columns=['k', 'i', 'j', 'alt_va', 'cond', 'remark'])
          pak_df.loc[:, ['k', 'i', 'j']] -= 1

          # specify data format
          formats = OrderedDict([('k', '{:>10d}'.format),
          ('i', '{:>10d}'.format),
          ('j', '{:>10d}'.format),
          ('alt_va', '{:>.2F}'.format),
          ('cond', '{:>15.6E}'.format),
          ('remark', '{>:50}'.format)])

          # create new stress period data: for numpy record array use DataFrame.to_records()
          pak_spd = {0: pak_df[list(formats.keys())].to_records(index=False)}

          # attach DRN package to new model
          pak = fpm.ModflowDrn(mf,
          stress_period_data=pak_spd,
          ipakcb=53,
          options=['NOPRINT'],
          filenames=os.path.join('..', 'ss2010', 'ss2010.{}'.format(pak_nam)),
          dtype=pak_spd[0].dtype)

          pak.write_file(check=False)





          share|improve this answer














          The only way I know to carry remarks over from an existing package is to open the file in read mode, create a pandas DataFrame with the column data, and build a new package out of it. Here is an example:



          import os
          import pandas as pd
          import flopy.modflow as fpm
          from collections import OrderedDict


          pak_nam = 'drn'
          mf_version = 'mfnwt'

          # the model from which the DRN package will be copied
          inmod = fpm.Modflow.load('10kTDS.nam',
          model_ws=r'..10kTDS',
          version=mf_version,
          load_only=['drn'],
          check=False)

          # the model where the new DRN package will be attached
          mf = fpm.Modflow.load('ss2010.nam',
          model_ws=os.path.join('..', 'ss2010'),
          version=mf_version,
          load_only=['dis', 'bas6'],
          check=False)

          # read the contents of the DRN package
          with open(inmod.drn.fn_path, 'r') as f:
          lines = f.readlines()

          # create pandas DataFrame
          data =
          for line in lines[3:]:
          pieces = line.strip().split('#')
          t = pieces[0].strip().split()
          remark = pieces[-1]
          if t[0] == '-1':
          break
          else:
          data.append([int(t[0]),
          int(t[1]),
          int(t[2]),
          float(t[3]),
          float(t[4]),
          '# ' + remark.strip()])
          pak_df = pd.DataFrame(data,
          columns=['k', 'i', 'j', 'alt_va', 'cond', 'remark'])
          pak_df.loc[:, ['k', 'i', 'j']] -= 1

          # specify data format
          formats = OrderedDict([('k', '{:>10d}'.format),
          ('i', '{:>10d}'.format),
          ('j', '{:>10d}'.format),
          ('alt_va', '{:>.2F}'.format),
          ('cond', '{:>15.6E}'.format),
          ('remark', '{>:50}'.format)])

          # create new stress period data: for numpy record array use DataFrame.to_records()
          pak_spd = {0: pak_df[list(formats.keys())].to_records(index=False)}

          # attach DRN package to new model
          pak = fpm.ModflowDrn(mf,
          stress_period_data=pak_spd,
          ipakcb=53,
          options=['NOPRINT'],
          filenames=os.path.join('..', 'ss2010', 'ss2010.{}'.format(pak_nam)),
          dtype=pak_spd[0].dtype)

          pak.write_file(check=False)






          share|improve this answer














          share|improve this answer



          share|improve this answer








          edited Nov 13 at 16:21

























          answered Nov 13 at 14:06









          Jason

          2871416




          2871416








          • 1




            Hey Jason, I was able to read in my files in a similar way to yours too, but it would be cool to see something within flopy.
            – rosskush
            Nov 14 at 16:58














          • 1




            Hey Jason, I was able to read in my files in a similar way to yours too, but it would be cool to see something within flopy.
            – rosskush
            Nov 14 at 16:58








          1




          1




          Hey Jason, I was able to read in my files in a similar way to yours too, but it would be cool to see something within flopy.
          – rosskush
          Nov 14 at 16:58




          Hey Jason, I was able to read in my files in a similar way to yours too, but it would be cool to see something within flopy.
          – rosskush
          Nov 14 at 16:58


















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